Research

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Highlighted

Sainfoin (Onobrychis spp.) crop ontology: supporting germplasm characterization and international research collaborations

Ebrar Karabulut, Kübra Erkoç, Murat Acı, Mahmut Aydın, Spencer Barriball, ..., Allison J. Miller, Matthew J. Rubin, Omar Tesdell, Brandon Schlautman, Muhammet Şakiroğlu

Frontiers in Plant Science   ·   15 May 2023   ·   doi:10.3389/fpls.2023.1177406

Journal

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2023

Sainfoin (Onobrychis spp.) crop ontology: supporting germplasm characterization and international research collaborations

Ebrar Karabulut, Kübra Erkoç, Murat Acı, Mahmut Aydın, Spencer Barriball, ..., Allison J. Miller, Matthew J. Rubin, Omar Tesdell, Brandon Schlautman, Muhammet Şakiroğlu

Frontiers in Plant Science   ·   15 May 2023   ·   doi:10.3389/fpls.2023.1177406

Journal

Toward plant breeding for multicrop systems

Virginia M. Moore, Tessa Peters, Brandon Schlautman, E. Charles Brummer

Proceedings of the National Academy of Sciences   ·   27 Mar 2023   ·   doi:10.1073/pnas.2205792119

2022

Re-imagining crop domestication in the era of high throughput phenomics

David L. Van Tassel, Lee R. DeHaan, Luis Diaz-Garcia, Jenna Hershberger, Matthew J. Rubin, Brandon Schlautman, Kathryn Turner, Allison J. Miller

Current Opinion in Plant Biology   ·   01 Feb 2022   ·   doi:10.1016/j.pbi.2021.102150

2021

Intermediate wheatgrass seed size and moisture dynamics inform grain harvest timing

Garett C. Heineck, Brandon Schlautman, Eugene P. Law, Matthew R. Ryan, Joseph W. Zimbric, Valentin Picasso, David E. Stoltenberg, Craig C. Sheaffer, Jacob M. Jungers

Crop Science   ·   10 Dec 2021   ·   doi:10.1002/csc2.20662

Perennial groundcovers: an emerging technology for soil conservation and the sustainable intensification of agriculture

Brandon Schlautman, Cynthia Bartel, Luis Diaz-Garcia, Shuizhang Fei, Scott Flynn, Erin Haramoto, Ken Moore, D Raj Raman

Emerging Topics in Life Sciences   ·   11 May 2021   ·   doi:10.1042/ETLS20200318

Process-based analysis of Thinopyrum intermedium phenological development highlights the importance of dual induction for reproductive growth and agronomic performance

Olivier Duchene, Benjamin Dumont, Douglas J. Cattani, Laura Fagnant, Brandon Schlautman, ..., Spencer Barriball, Jacob M. Jungers, Valentin D. Picasso, Christophe David, Florian Celette

Agricultural and Forest Meteorology   ·   01 May 2021   ·   doi:10.1016/j.agrformet.2021.108341

2020

New Food Crop Domestication in the Age of Gene Editing: Genetic, Agronomic and Cultural Change Remain Co-evolutionarily Entangled

David L. Van Tassel, Omar Tesdell, Brandon Schlautman, Matthew J. Rubin, Lee R. DeHaan, Timothy E. Crews, Aubrey Streit Krug

Frontiers in Plant Science   ·   11 Jun 2020   ·   doi:10.3389/fpls.2020.00789

Envisioning perennial agroecosystems in Palestine

Omar Tesdell, Yusra Othman, Yara Dowani, Samir Khraishi, Mary Deeik, Fouad Muaddi, Brandon Schlautman, Aubrey Streit Krug, David Van Tassel

Journal of Arid Environments   ·   01 Apr 2020   ·   doi:10.1016/j.jaridenv.2019.104085

Morphometric approaches to promote the use of exotic germplasm for improved food security and resilience to climate change: a kura clover example

Brandon Schlautman, Luis Diaz-Garcia, Spencer Barriball

Plant Science   ·   01 Jan 2020   ·   doi:10.1016/j.plantsci.2019.110319

2019

Assessment of the biogeographical variation of seed size and seed oil traits in wildSilphium integrifoliumMichx. genotypes

Stephan Reinert, David L. Van Tassel, Brandon Schlautman, Nolan C. Kane, Brent S. Hulke

Plant Genetic Resources: Characterization and Utilization   ·   10 Sep 2019   ·   doi:10.1017/s1479262119000248

Building a botanical foundation for perennial agriculture: Global inventory of wild, perennial herbaceous Fabaceae species

Claudia Ciotir, Wendy Applequist, Timothy E. Crews, Neculai Cristea, Lee R. DeHaan, ..., James Solomon, Andrew Townesmith, David Van Tassel, James Zarucchi, Allison J. Miller

PLANTS, PEOPLE, PLANET   ·   05 Jun 2019   ·   doi:10.1002/ppp3.37

2018

Genetic diversity and cultivar variants in the NCGR cranberry (Vaccinium macrocarpon Aiton) collection

B. Schlautman, G. Covarrubias-Pazaran, L. Rodriguez-Bonilla, K. Hummer, N. Bassil, T. Smith, J. Zalapa

Journal of Genetics   ·   30 Nov 2018   ·   doi:10.1007/s12041-018-1036-3

Multivariate GBLUP Improves Accuracy of Genomic Selection for Yield and Fruit Weight in Biparental Populations of Vaccinium macrocarpon Ait

Giovanny Covarrubias-Pazaran, Brandon Schlautman, Luis Diaz-Garcia, Edward Grygleski, James Polashock, Jennifer Johnson-Cicalese, Nicholi Vorsa, Massimo Iorizzo, Juan Zalapa

Frontiers in Plant Science   ·   12 Sep 2018   ·   doi:10.3389/fpls.2018.01310

Image-based phenotyping for identification of QTL determining fruit shape and size in American cranberry (Vaccinium macrocarponL.)

Luis Diaz-Garcia, Giovanny Covarrubias-Pazaran, Brandon Schlautman, Edward Grygleski, Juan Zalapa

PeerJ   ·   15 Aug 2018   ·   doi:10.7717/peerj.5461

Massive phenotyping of multiple cranberry populations reveals novel QTLs for fruit anthocyanin content and other important chemical traits

Luis Diaz-Garcia, Brandon Schlautman, Giovanny Covarrubias-Pazaran, Andrew Maule, Jennifer Johnson-Cicalese, Edward Grygleski, Nicholi Vorsa, Juan Zalapa

Molecular Genetics and Genomics   ·   02 Jul 2018   ·   doi:10.1007/s00438-018-1464-z

Perennial Grain Legume Domestication Phase I: Criteria for Candidate Species Selection

Brandon Schlautman, Spencer Barriball, Claudia Ciotir, Sterling Herron, Allison Miller

Sustainability   ·   07 Mar 2018   ·   doi:10.3390/su10030730

2017

Comparative genetic mapping reveals synteny and collinearity between the American cranberry and diploid blueberry genomes

Brandon Schlautman, Luis Diaz-Garcia, Giovanny Covarrubias-Pazaran, Nathan Schlautman, Nicholi Vorsa, ..., Susan McCallum, Julie Graham, Massimo Iorizzo, Lisa J. Rowland, Juan Zalapa

Molecular Breeding   ·   22 Dec 2017   ·   doi:10.1007/s11032-017-0765-y

Accelerating Silphium Domestication: An Opportunity to Develop New Crop Ideotypes and Breeding Strategies Informed by Multiple Disciplines

David L. Van Tassel, Kenneth A. Albrecht, James D. Bever, Arvid A. Boe, Yaniv Brandvain, ..., Pablo R. Speranza, M. Kathryn Turner, Alejandra E. Vilela, Philipp von Gehren, Christian Wever

Crop Science   ·   01 May 2017   ·   doi:10.2135/cropsci2016.10.0834

Cranberry SSR multiplexing panels for DNA horticultural fingerprinting and genetic studies

Brandon Schlautman, Jenny Bolivar-Medina, Sarah Hodapp, Juan Zalapa

Scientia Horticulturae   ·   01 May 2017   ·   doi:10.1016/j.scienta.2017.03.005

SOFIA: An R Package for Enhancing Genetic Visualization With Circos

Luis Diaz-Garcia, Giovanny Covarrubias-Pazaran, Brandon Schlautman, Juan Zalapa

Journal of Heredity   ·   20 Apr 2017   ·   doi:10.1093/jhered/esx023

Construction of a High-Density American Cranberry (Vaccinium macrocarponAit.) Composite Map Using Genotyping-by-Sequencing for Multi-pedigree Linkage Mapping

Brandon Schlautman, Giovanny Covarrubias-Pazaran, Luis Diaz-Garcia, Massimo Iorizzo, James Polashock, Edward Grygleski, Nicholi Vorsa, Juan Zalapa

G3 Genes|Genomes|Genetics   ·   01 Apr 2017   ·   doi:10.1534/g3.116.037556

Intra- and interspecific hybridization in invasive Siberian elm

Heidi Hirsch, Johanne Brunet, Juan E. Zalapa, Henrik von Wehrden, Matthias Hartmann, ..., Brandon Schlautman, Evsey Kosman, Karsten Wesche, Daniel Renison, Isabell Hensen

Biological Invasions   ·   16 Mar 2017   ·   doi:10.1007/s10530-017-1404-6

2016

GiNA, an Efficient and High-Throughput Software for Horticultural Phenotyping

Luis Diaz-Garcia, Giovanny Covarrubias-Pazaran, Brandon Schlautman, Juan Zalapa

PLOS ONE   ·   16 Aug 2016   ·   doi:10.1371/journal.pone.0160439

Exploiting genotyping by sequencing to characterize the genomic structure of the American cranberry through high-density linkage mapping

Giovanny Covarrubias-Pazaran, Luis Diaz-Garcia, Brandon Schlautman, Joseph Deutsch, Walter Salazar, ..., Shawn Steffan, Massimo Iorizzo, James Polashock, Nicholi Vorsa, Juan Zalapa

BMC Genomics   ·   13 Jun 2016   ·   doi:10.1186/s12864-016-2802-3

Fragman: an R package for fragment analysis

Giovanny Covarrubias-Pazaran, Luis Diaz-Garcia, Brandon Schlautman, Walter Salazar, Juan Zalapa

BMC Genetics   ·   21 Apr 2016   ·   doi:10.1186/s12863-016-0365-6

Discriminating power of microsatellites in cranberry organelles for taxonomic studies in Vaccinium and Ericaceae

Brandon Schlautman, Giovanny Covarrubias-Pazaran, Diego Fajardo, Shawn Steffan, Juan Zalapa

Genetic Resources and Crop Evolution   ·   02 Feb 2016   ·   doi:10.1007/s10722-016-0371-6

2015

Development of a high-density cranberry SSR linkage map for comparative genetic analysis and trait detection

Brandon Schlautman, Giovanny Covarrubias-Pazaran, Luis A. Diaz-Garcia, Jennifer Johnson-Cicalese, Massimo Iorrizo, ..., Eric Wiesman, Shawn Steffan, James Polashock, Nicholi Vorsa, Juan Zalapa

Molecular Breeding   ·   01 Aug 2015   ·   doi:10.1007/s11032-015-0367-5

Development and Validation of 697 Novel Polymorphic Genomic and EST-SSR Markers in the American Cranberry (Vaccinium macrocarpon Ait.)

Brandon Schlautman, Diego Fajardo, Tierney Bougie, Eric Wiesman, James Polashock, Nicholi Vorsa, Shawn Steffan, Juan Zalapa

Molecules   ·   27 Jan 2015   ·   doi:10.3390/molecules20022001

2014

Clonal diversity and genetic differentiation revealed by SSR markers in wildVaccinium macrocarponandVaccinium oxycoccos

J.E. Zalapa, T.C. Bougie, T.A. Bougie, B.J. Schlautman, E. Wiesman, A. Guzman, D.A. Fajardo, S. Steffan, T. Smith

Annals of Applied Biology   ·   06 Nov 2014   ·   doi:10.1111/aab.12173

Generation and Characterization of a Sugarbeet Transcriptome and Transcript‐Based SSR Markers

Karen Klotz Fugate, Diego Fajardo, Brandon Schlautman, Jocleita Peruzzo Ferrareze, Melvin D. Bolton, Larry G. Campbell, Eric Wiesman, Juan Zalapa

The Plant Genome   ·   01 Jul 2014   ·   doi:10.3835/plantgenome2013.11.0038

The American cranberry mitochondrial genome reveals the presence of selenocysteine (tRNA-Sec and SECIS) insertion machinery in land plants

Diego Fajardo, Brandon Schlautman, Shawn Steffan, James Polashock, Nicholi Vorsa, Juan Zalapa

Gene   ·   01 Feb 2014   ·   doi:10.1016/j.gene.2013.11.104